I'm not sure exactly which fans they are, but they are 3 pin. I believe they are the LL120 RGB. I had bought 3 extra to match the ones that came with the case since the AIO didn't come with the same fans.
I had tried seeing if the fans that came with the AIO would work, to no avail. After replugging in the case fans and booting back up, port 1 is now the only functional port on the commander pro. All the fans will function only in that port.
I tried flashing the firmware and it didn't help. Changing the ports from Auto to 3-pin to 4-pin doesn't do anything, except Port 1 actually registers in Auto now for some reason.