I have this same issue, commander pro will reset the entire bus it is connected to. I've isolated it by switching USB bus ports on the motherboard and monitoring with USBLogView, and sure enough it will reset the entire bus. I was able to move it to its own bus at least, for now.
Asus X570-Pro on bios firmware 1005 with Commander Pro on 0.9.212 and iCue 3.19.120. (Latest)
Was also tested on earlier versions that everything shipped with, same result.
edit: I also disabled the usb connect/disconnect sound by setting it to none in sound preferences, for sanity reasons.