Thanks c-attack, I really appreciate the help/suggestions. I agree it feels like a core issue failing to apply the settings to the fans. The fans spin and 1/2 leds light up so it seems unlikely there's issues with them. I'd just be surprised if I have 3/3 broken cores, so again I agree it's more likely software related. I've seen a few people have compatibility issues with asus motherboards, but I'm using a gigabyte board (x570 aorus master).
I've disconnected all my fans from the lighting node cores, disconnected a core so I now have 1 and have connected a single fan to it to simplify testing.
I'm in the process of uninstalling iCUE and will delete the Corsair directory in appdata afterwards (as I'm not using any other corsair software). I'll let you know what happens to the fans after restarting and after reinstalling iCUE. Fingers crossed!
I did an export of the logs a few days ago, I did spot this:
2020-09-08T17:01:18 W libpng warning: iCCP: known incorrect sRGB profile
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 0
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 10
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 11
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 12
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 13
2020-09-08T17:01:19 C cue.server.device: Unknown device type: 14
2020-09-08T17:01:19 I cue.lightings.direct_player: Stopped lighting worker in 0x57e0
If this doesn't work I'm happy to share whatever logs might help.