Hah, I guess I typed the right combination of key words and found an explanation you gave in another post.
"As mentioned above, you really don't need to power those fans from the Commander Pro instead of the cooler unless they are 3 pin DC motors. There is no inherent advantage. There is one disadvantage. When using the cooler's internal fan controller, it will keep the fans going at your preferred settings with or without the software. That is includes the boot cycle. If you run them from the C-Pro and set the control variable to coolant temp, the C-Pro will loose contact with that data any time the software is not running. You will get a max fan blast at boot."
I will now be reconnecting those fans to the H100i. Do those fans go onto the 4 pin splitter with the 1 labeled on it? If so, now I guess my question is what are the other halves of the splitters used for?