I did download and install iCue before HWMonitor on both installs, And it wasn't showing, so I don't think its because of HWMonitor.
Also, I don't see the Commander Core in HWMonitor, And on iCue there is no values, just fans with RGB, it might be because I plugged the fans into the h150i core, which is where I control all of my case fans under "Fan #1", always worked fine though, was never an issue.
I tried the .zip version and its showing the PSU still with the correct values, but iCue isn't, I also tried reinstalling iCue completely and deleting the folders / regedit values, with no luck.